Cataloging a year of blogging: complexity in evolution, general models, and philosophy

Last month, with just hours to spare in January, I shared a linkdex of the 14 cancer-related posts from TheEGG in 2016. Now, as February runs out, it’s time to reflect on the 15 non cancer-specific posts from last year. Although, as we’ll see, some of them are still related to mathematical oncology. With a nice number like 15, I feel that I am obliged to divide them into three categories of five articles each. Which does make for a stretch in narrowing down themes.

The three themes were: (1) complexity, supply driven evolution, and abiogenesis, (2) general models and their features, (3) algorithmic philosophy and the social good.

And yes, two months have passed and all I’ve posted to the blog are two 2016-in-review posts. Even those were rushed and misshapen. But I promise there is more and better coming; hopefully with a regular schedule.

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Cataloging a year of cancer blogging: double goods, measuring games & resistance

Happy year of the Rooster and 2017,

This month marks the start of the 7th calendar year of updates on TheEGG. Time to celebrate and summarize the posts of the year past. In 2016 there was the same number of posts as 2015, but instead of being clustered in a period of <7 months, they were more uniformly distributed across the calendar. Every month had at least one new post, although not necessarily written by me (in the case of the single post by Abel Molina in October). There were 29 entries, one linkdex cataloging 2015, and two updates on EGT reading group 51 – 55 & 56 – 60.

In September, as part of my relocation from Tampa to Oxford, I attended the 4th Heidelberg Laureate Forum. I wrote two pieces for their blog: Alan Turing and science through the algorithmic lens and a spotlight on Jan Poleszczuk: from HLF2013 to mathematical oncology. You can read those (and more posts coming this year) on their blog. I won’t go into more detail here.

As before, this post is meant to serve as an organizing reference and a way to uncover common themes on TheEGG. A list of TL;DRs from 2016. The year was split up into four major categories: cancer, complexity & evolution, other models, and philosophy. The cancer posts make up almost half the articles from last year, and are further subdivided into three subsections: double goods game, experimental game theory, and therapy resistance. I want to focus on these cancer posts for this linkdex, and the other three categories in the next installment.

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EGT Reading Group 56 – 60

Since my last update in February, the evolutionary game theory reading group has passed another milestone with 5 more meetings over the last 4 months. We looked at a broad range of topics, from life histories in cancer to the effects of heterogeneity and biodiversity. From the definitions of fitness to analyzing digital pathology. Part of this variety came from suggested papers by the group members. The paper for EGT 57 was suggested by Jill Gallaher, EGT 58 by Robert Vander Velde, and the second paper for EGT 60 came from a tip by Jacob Scott. We haven’t yet recovered our goal of regular weekly meetings, but we’ve more than halved the time it took for these five meetings compared to the previous ones.

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EGT Reading Group 51 – 55 and a photo

The evolutionary game theory reading group — originally part of the raison d’être for this blog — has continued at a crawling pace. Far from the weekly groups of its early days in 2010, we’ve only had 5 meetings since my last update on March 26th, 2015 — almost 11 months ago. Surprisingly, this is a doubling in pace, with the 46 to 50 milestone having taken 22 months. To celebrate, I wanted to update you on what we’ve read and discussed:
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Cataloging a year of blogging

Happy Old New Year.

January 2016 is the the start of the 6th calendar year and the 41st month with updates to TheEGG. The reason for the large discrepancy between these two numbers is occasional months without activity. The past year was exceptional in this regard with the longest single silence on the blog between April 4th and October 26th. This means that the year saw only 29 new entries, 2 indexes cataloging 2014, a report on the EGT reading group, and an update on readership. This post is meant to organize the last year of activity for future reference, and to try to uncover common themes.

If you like lists and TL;DRs then this is for you.
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Emotional contagion and rational argument in philosophical texts

Last week I returned to blogging with some reflections on reading and the written word more generally. Originally, I was aiming to write a response to Roger Schank’s stance that “reading is no way to learn”, but I wandered off on too many tangents for an a single post or for a coherent argument. The tangent that I left for this post is the role of emotion and personality in philosophical texts.

In my last entry, I focused on the medium independent aspects of Schank’s argument, and identified two dimensions along which a piece of media and our engagement with it can vary: (1) passive consumption versus active participation, and (2) the level of personalization. The first continuum has a clearly better end on the side of more active engagement. If we are comparing mediums then we should prefer ones that foster more active engagement from the participants. The second dimension is more ambiguous: sometimes a more general piece of media is better than a bespoke piece. What is better becomes particularly ambiguous when being forced to adapt a general approach to your special circumstances encourages more active engagement.

In this post, I will shift focus from comparing mediums to a particular aspect of text and arguments: emotional engagement. Of course, this also shows up in other mediums, but my goal this time is not to argue across mediums.

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Passive vs. active reading and personalization

As you can probably tell, dear reader, recently I have been spending too much time reading and not enough time writing. The blog has been silent. What better way to break this silence than to write a defense of reading? Well, sort of. It would not be much of an eye-opener for you — nor a challenge for me — to simply argue for reading. Given how you are consuming this content, you probably already think that the written word is a worthwhile medium. Given how I am presenting myself, I probably think the same. But are our actions really an endorsement of reading or just the form of communication we begrudgingly resort to because of a lack of better alternatives?

Ostensibly this post will be a qualified defense against an attack on reading by Roger Schank at Education Outrage. Although it is probably best to read it as just a series of reflections on my own experience.[1]

I will focus on the medium-independent aspects of learning that I think give weight to Schank’s argument: the distinction between passive and active learning, and the level of personalization. This will be followed next week by a tangent discussion on the importance of emotional aspects of the text, and close with some reflections on the role of literary value, historic context, and fiction in philosophical arguments. This last point is prompted more by my recent readings of Plato than by Schank. In other words, much like last year, I will rely on Socrates to help get me out of a writing slump.
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EGT Reading Group 46 – 50 and a photo

Part of the original intent for this blog was to accompany the evolutionary game theory reading group that I started running at McGill in 2010. The blog has taken off, but the reading group has waned. However, since I still have some hope to revive a regular reading group, I have continued to call occasional journal discussion meetings that I organize as the EGT reading group. These meetings are very sparse and highly irregular, not the weekly groups that they were in 2010. For example, since my last update on May 28th, 2013, around 22 months have passed with the group meeting only 5 times. Still, these 5 meetings bring us to a milestone and hence an update on the papers we’ve read:
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A detailed update on readership for the first 200 posts

It is time — this is the 201st article on TheEGG — to get an update on readership since our 151st post and lament on why academics should blog. I apologize for this navel-gazing post, and it is probably of no interest to you unless you are really excited about blog statistics. I am writing this post largely for future reference and to celebrate this arbitrary milestone.

The of statistics in this article are largely superficial proxies — what does a view even mean? — and only notable because of how easy they are to track. These proxies should never be used to seriously judge academics but I do think they can serve as a useful self-tracking tool. Making your blog’s statistics available publicly can be a useful comparison for other bloggers to get an idea of what sort of readership and posting habits are typical. In keeping with this rough and lighthearted comparison, according to Jeromy Anglim’s order-of-magnitude rules of thumb, in the year since the last update the blog has been popular in terms of RSS subscribers and relatively popular in terms of annual page views.

As before, I’ll start with the public self-metrics of the viewership graph for the last 6 and a half months:

Columns are views per week at TheEGG blog since the end of August, 2014. The vertical lines separate months, and the black line is average views per day for each month. The scale for weeks is on the left, it is different from the scale for daily average, those are labeled at each height.

Columns are views per week at TheEGG blog since the end of August, 2014. The vertical lines separate months, and the black line is average views per day for each month. The scale for weeks is on the left, it is different from the scale for daily average, those are labeled at each height.

If you’d like to know more, dear reader, then keep reading. Otherwise, I will see you on the next post!
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A year in books: philosophy, psychology, and political economy

If you follow the Julian calendar — which I do when I need a two week extension on overdue work — then today is the first day of 2015.

Happy Old New Year!

This also means that this is my last day to be timely with a yet another year-in-review post; although I guess I could also celebrate the Lunar New Year on February 19th. Last year, I made a resolution to read one not-directly-work-related book a month, and only satisfied it in an amortized analysis; I am repeating the resolution this year. Since I only needed two posts to catalog the practical and philosophical articles on TheEGG, I will try something new with this one: a list and mini-review of the books I read last year to meet my resolution. I hope that based on this, you can suggest some books for me to read in 2015; or maybe my comments will help you choose your next book to read. I know that articles and blogs I’ve stumbled across have helped guide my selection. If you want to support TheEGG directly and help me select the books that I will read this year then consider donating something from TheEGG wishlist.

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